IL_7YLA_066

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7YLA|1|I|A|1801, 7YLA|1|I|C|1816, 7YLA|1|I|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_066 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0662

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|U|1798
7YLA|1|I|G|1799
7YLA|1|I|C|1800
7YLA|1|I|A|1801
7YLA|1|I|A|1802
7YLA|1|I|A|1803
7YLA|1|I|C|1804
*
7YLA|1|I|G|1813
7YLA|1|I|G|1814
7YLA|1|I|A|1815
7YLA|1|I|C|1816
7YLA|1|I|G|1817
7YLA|1|I|U|1818
7YLA|1|I|A|1819
7YLA|1|I|U|1820
7YLA|1|I|A|1821

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain K

50S ribosomal protein L2