IL_7YLA_072

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

7YLA|1|I|A|1938, 7YLA|1|I|U|1944, 7YLA|1|I|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_072 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1025

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|C|1934
7YLA|1|I|G|1935
7YLA|1|I|A|1936
7YLA|1|I|A|1937
7YLA|1|I|A|1938
7YLA|1|I|U|1939
7YLA|1|I|U|1940
7YLA|1|I|C|1941
7YLA|1|I|C|1942
7YLA|1|I|U|1943
7YLA|1|I|U|1944
7YLA|1|I|G|1945
*
7YLA|1|I|C|1961
7YLA|1|I|C|1962
7YLA|1|I|U|1963
7YLA|1|I|G|1964

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain 6

GTPase HflX

Chain K

50S ribosomal protein L2