IL_7YLA_097

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7YLA|1|I|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0643

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|C|2636
7YLA|1|I|U|2637
7YLA|1|I|G|2638
7YLA|1|I|A|2639
7YLA|1|I|G|2640
*
7YLA|1|I|C|2774
7YLA|1|I|G|2775
7YLA|1|I|A|2776
7YLA|1|I|G|2777
7YLA|1|I|A|2778
7YLA|1|I|U|2779
7YLA|1|I|G|2780
7YLA|1|I|A|2781
7YLA|1|I|G|2782

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

50S ribosomal protein L13