IL_7Z20_050

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

7Z20|1|b|G|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_050 not in the Motif Atlas

Geometric match to IL_5J7L_291

Geometric discrepancy: 0.1031

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

7Z20|1|b|C|1318
7Z20|1|b|C|1319
7Z20|1|b|A|1320
7Z20|1|b|A|1321
7Z20|1|b|C|1322
*
7Z20|1|b|G|1330
7Z20|1|b|G|1331
7Z20|1|b|G|1332

Current chains

Chain b

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain z

Gelation factor