IL_7Z20_059

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_059 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.0749

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7Z20|1|b|U|1473
7Z20|1|b|G|1474
7Z20|1|b|U|1475
7Z20|1|b|A|1476
7Z20|1|b|G|1477
*
7Z20|1|b|U|1512
7Z20|1|b|G|1513
7Z20|1|b|A|1514
7Z20|1|b|G|1515
7Z20|1|b|G|1516

Current chains

Chain b

23S rRNA

Nearby chains