IL_7Z20_069

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_069 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1222

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7Z20|1|b|U|1719
7Z20|1|b|G|1720
7Z20|1|b|A|1721
7Z20|1|b|A|1722
7Z20|1|b|G|1723
*
7Z20|1|b|U|1735
7Z20|1|b|G|1736
7Z20|1|b|G|1737
7Z20|1|b|A|1738
7Z20|1|b|G|1739

Current chains

Chain b

23S rRNA

Nearby chains