IL_7Z20_094

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_094 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1437

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7Z20|1|b|A|2458
7Z20|1|b|U|2459
7Z20|1|b|A|2460
*
7Z20|1|b|U|2488
7Z20|1|b|G|2489
7Z20|1|b|U|2490
7Z20|1|b|U|2491
7Z20|1|b|U|2492

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain y

50S ribosomal protein L27