IL_7Z20_114

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z20_114 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0891

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7Z20|1|b|U|1850
7Z20|1|b|U|1851
7Z20|1|b|A|1852
7Z20|1|b|A|1853
7Z20|1|b|U|1854
7Z20|1|b|U|1855
7Z20|1|b|G|1856
7Z20|1|b|A|1857
7Z20|1|b|U|1858
7Z20|1|b|G|1859
*
7Z20|1|b|U|1881
7Z20|1|b|U|1882
7Z20|1|b|G|1883
7Z20|1|b|A|1884
7Z20|1|b|U|1885
7Z20|1|b|C|1886
7Z20|1|b|G|1887
7Z20|1|b|A|1888
7Z20|1|b|A|1889
7Z20|1|b|G|1890

Current chains

Chain b

23S rRNA

Nearby chains