IL_7Z34_017

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CAGC

Length

7 nucleotides

Bulged bases

7Z34|1|1|A|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_017 not in the Motif Atlas

Geometric match to IL_1L9A_003

Geometric discrepancy: 0.274

The information below is about IL_1L9A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7Z34|1|1|G|511
7Z34|1|1|U|512
7Z34|1|1|G|513
*
7Z34|1|1|C|577
7Z34|1|1|A|578
7Z34|1|1|G|579
7Z34|1|1|C|580

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A