IL_7Z34_067

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7Z34|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_067 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1866

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7Z34|1|1|C|1918
7Z34|1|1|G|1919
7Z34|1|1|U|1920
7Z34|1|1|A|1921
7Z34|1|1|A|1922
7Z34|1|1|C|1923
*
7Z34|1|1|G|1928
7Z34|1|1|G|1929
7Z34|1|1|A|1930
7Z34|1|1|U|1931
7Z34|1|1|A|1932
7Z34|1|1|A|1933
7Z34|1|1|G|1934

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain I

Bud site selection protein 20

Chain p

60S ribosomal protein L43-A