IL_7Z34_080

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7Z34|1|1|A|2281, 7Z34|1|1|C|2287, 7Z34|1|1|C|2306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_080 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.562

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7Z34|1|1|C|2277
7Z34|1|1|C|2278
7Z34|1|1|A|2279
7Z34|1|1|A|2280
7Z34|1|1|A|2281
7Z34|1|1|U|2282
7Z34|1|1|G|2283
7Z34|1|1|C|2284
7Z34|1|1|C|2285
7Z34|1|1|U|2286
7Z34|1|1|C|2287
7Z34|1|1|G|2288
*
7Z34|1|1|C|2304
7Z34|1|1|G|2305
7Z34|1|1|C|2306
7Z34|1|1|G|2307

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain v

60S ribosomal export protein NMD3