IL_7Z34_110

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_110 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.2801

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7Z34|1|1|C|3235
7Z34|1|1|U|3236
7Z34|1|1|U|3237
7Z34|1|1|G|3238
*
7Z34|1|1|C|3249
7Z34|1|1|U|3250
7Z34|1|1|U|3251
7Z34|1|1|G|3252

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L16-A