IL_7Z34_123

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

7Z34|1|2|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_123 not in the Motif Atlas

Homologous match to IL_5TBW_377

Geometric discrepancy: 0.2414

The information below is about IL_5TBW_377

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7Z34|1|2|A|72
7Z34|1|2|C|73
7Z34|1|2|C|74
7Z34|1|2|G|75
7Z34|1|2|A|76
7Z34|1|2|G|77
7Z34|1|2|U|78
7Z34|1|2|A|79
7Z34|1|2|G|80
*
7Z34|1|2|C|100
7Z34|1|2|G|101
7Z34|1|2|A|102
7Z34|1|2|A|103
7Z34|1|2|A|104
7Z34|1|2|C|105
7Z34|1|2|U|106

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain F

60S ribosomal protein L7-A

Chain S

60S ribosomal protein L20-A