IL_7Z34_140

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7Z34|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_140 not in the Motif Atlas

Homologous match to IL_8P9A_313

Geometric discrepancy: 0.2158

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

7Z34|1|1|U|2200
7Z34|1|1|G|2201
*
7Z34|1|1|U|2241
7Z34|1|1|A|2242
7Z34|1|1|A|2243
7Z34|1|1|A|2244

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain v

60S ribosomal export protein NMD3