IL_7Z3O_111

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7Z3O|1|1|U|2819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z3O_111 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1683

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7Z3O|1|1|G|2787
7Z3O|1|1|U|2788
7Z3O|1|1|G|2789
*
7Z3O|1|1|U|2817
7Z3O|1|1|U|2818
7Z3O|1|1|U|2819
7Z3O|1|1|U|2820
7Z3O|1|1|U|2821

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LI

60S ribosomal protein L10-like protein