IL_7Z3O_167

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7Z3O|1|2|A|538, 7Z3O|1|2|A|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z3O_167 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3119

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7Z3O|1|2|G|511
7Z3O|1|2|A|512
7Z3O|1|2|G|513
*
7Z3O|1|2|C|533
7Z3O|1|2|G|534
7Z3O|1|2|A|535
7Z3O|1|2|G|536
7Z3O|1|2|G|537
7Z3O|1|2|A|538
7Z3O|1|2|A|539
7Z3O|1|2|C|540

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain Se

40S ribosomal protein S30