IL_7Z4C_001

3D structure

PDB id

7Z4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 bound to 6 nucleotide complementary DNA substrate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

AGAG*CAAGUU

Length

10 nucleotides

Bulged bases

7Z4C|1|A|A|28, 7Z4C|1|A|G|43, 7Z4C|1|A|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z4C_001 not in the Motif Atlas

Geometric match to IL_6AEG_001

Geometric discrepancy: 0.1575

The information below is about IL_6AEG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.6

Basepair signature

cWW-cWW-L-R-cWW-L

Number of instances in this motif group

14

Unit IDs

7Z4C|1|A|A|26
7Z4C|1|A|G|27
7Z4C|1|A|A|28
7Z4C|1|A|G|29
*
7Z4C|1|A|C|40
7Z4C|1|A|A|41
7Z4C|1|A|A|42
7Z4C|1|A|G|43
7Z4C|1|A|U|44
7Z4C|1|A|U|45

Current chains

Chain A

sgRNA

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1