IL_7ZFW_003

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZFW_003 not in the Motif Atlas

Homologous match to IL_8C3A_006

Geometric discrepancy: 0.0992

The information below is about IL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88613.1

Basepair signature

cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7ZFW|1|L5|C|81
7ZFW|1|L5|U|82
7ZFW|1|L5|C|83
7ZFW|1|L5|A|84
7ZFW|1|L5|G|85
7ZFW|1|L5|U|86
7ZFW|1|L5|A|87
7ZFW|1|L5|A|88
*
7ZFW|1|L5|U|96
7ZFW|1|L5|G|97
7ZFW|1|L5|A|98
7ZFW|1|L5|A|99
7ZFW|1|L5|C|100
7ZFW|1|L5|A|101
7ZFW|1|L5|G|102

Current chains

Chain L5

RNA (615-MER)

Nearby chains