IL_7ZFW_019

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZFW_019 not in the Motif Atlas

Homologous match to IL_8C3A_018

Geometric discrepancy: 0.5292

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7ZFW|1|L5|G|461
7ZFW|1|L5|G|462
7ZFW|1|L5|A|463
7ZFW|1|L5|G|464
*
7ZFW|1|L5|C|691
7ZFW|1|L5|A|692
7ZFW|1|L5|C|693
7ZFW|1|L5|C|694

Current chains

Chain L5

RNA (615-MER)

Nearby chains