IL_7ZJW_012

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_012 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2834

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|C|118
7ZJW|1|L5|G|119
7ZJW|1|L5|A|120
7ZJW|1|L5|A|121
*
7ZJW|1|L5|U|152
7ZJW|1|L5|G|153

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein eL8

Chain LQ

60S ribosomal protein L15

Chain Lk

60S ribosomal protein uL29