IL_7ZJW_032

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

7ZJW|1|L5|G|660, 7ZJW|1|L5|A|661, 7ZJW|1|L5|C|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_032 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2472

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7ZJW|1|L5|G|488
7ZJW|1|L5|G|489
*
7ZJW|1|L5|C|659
7ZJW|1|L5|G|660
7ZJW|1|L5|A|661
7ZJW|1|L5|C|662
7ZJW|1|L5|C|663

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LT

60S ribosomal Protein eL18

Chain Ls

60S ribosomal protein eL28