IL_7ZJW_038

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GUCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_038 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.3116

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7ZJW|1|L5|C|521
7ZJW|1|L5|U|522
7ZJW|1|L5|C|523
*
7ZJW|1|L5|G|632
7ZJW|1|L5|U|633
7ZJW|1|L5|C|634
7ZJW|1|L5|G|635
7ZJW|1|L5|G|636

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein eL13