IL_7ZJW_044

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7ZJW|1|L5|G|743, 7ZJW|1|L5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_044 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2414

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZJW|1|L5|G|740
7ZJW|1|L5|A|741
7ZJW|1|L5|A|742
7ZJW|1|L5|G|743
7ZJW|1|L5|G|744
7ZJW|1|L5|U|745
7ZJW|1|L5|G|746
7ZJW|1|L5|G|747
*
7ZJW|1|L5|U|808
7ZJW|1|L5|G|809
7ZJW|1|L5|U|810
7ZJW|1|L5|U|811
7ZJW|1|L5|A|812
7ZJW|1|L5|C|813
7ZJW|1|L5|A|814
7ZJW|1|L5|G|815
7ZJW|1|L5|C|816

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L14

Chain LV

60S ribosomal protein eL20