IL_7ZJW_053

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGCG*CGCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_053 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.3911

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ZJW|1|L5|G|1061
7ZJW|1|L5|G|1062
7ZJW|1|L5|C|1063
7ZJW|1|L5|G|1064
*
7ZJW|1|L5|C|1079
7ZJW|1|L5|G|1080
7ZJW|1|L5|C|1081
7ZJW|1|L5|C|1082
7ZJW|1|L5|C|1083

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein