3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_057 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3017
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

7ZJW|1|L5|G|1380
7ZJW|1|L5|G|1381
7ZJW|1|L5|A|1382
7ZJW|1|L5|U|1383
7ZJW|1|L5|C|1384
*
7ZJW|1|L5|G|1410
7ZJW|1|L5|C|1411
7ZJW|1|L5|G|1412
7ZJW|1|L5|C|1413
7ZJW|1|L5|A|1414
7ZJW|1|L5|C|1415

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LT
60S ribosomal Protein eL18
Chain Le
60S ribosomal protein L29

Coloring options:


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