IL_7ZJW_069

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|A|1592, 7ZJW|1|L5|A|1593

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_069 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0705

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7ZJW|1|L5|G|1579
7ZJW|1|L5|OMG|1580
7ZJW|1|L5|G|1581
*
7ZJW|1|L5|U|1591
7ZJW|1|L5|A|1592
7ZJW|1|L5|A|1593
7ZJW|1|L5|U|1594
7ZJW|1|L5|C|1595

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain LQ

60S ribosomal protein L15

Chain LS

60S ribosomal protein uL22

Chain Lm

60S ribosomal protein L37