3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCGAA(PSU)G*CAAAC
Length
12 nucleotides
Bulged bases
7ZJW|1|L5|G|1680
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_075 not in the Motif Atlas
Geometric match to IL_4V9F_035
Geometric discrepancy: 0.2723
The information below is about IL_4V9F_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

7ZJW|1|L5|G|1678
7ZJW|1|L5|C|1679
7ZJW|1|L5|G|1680
7ZJW|1|L5|A|1681
7ZJW|1|L5|A|1682
7ZJW|1|L5|PSU|1683
7ZJW|1|L5|G|1684
*
7ZJW|1|L5|C|1724
7ZJW|1|L5|A|1725
7ZJW|1|L5|A|1726
7ZJW|1|L5|A|1727
7ZJW|1|L5|C|1728

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LG
Ribosomal_L18_c domain-containing protein
Chain LL
60S ribosomal protein L10
Chain LW
60S ribosomal protein eL21

Coloring options:


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