3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
7ZJW|1|L5|U|2009
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_081 not in the Motif Atlas
Homologous match to IL_8C3A_051
Geometric discrepancy: 0.1202
The information below is about IL_8C3A_051
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

7ZJW|1|L5|U|1844
7ZJW|1|L5|U|1845
7ZJW|1|L5|A|1846
7ZJW|1|L5|A|1847
7ZJW|1|L5|G|1848
*
7ZJW|1|L5|C|2006
7ZJW|1|L5|C|2007
7ZJW|1|L5|A|2008
7ZJW|1|L5|U|2009
7ZJW|1|L5|A|2010

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LI
60S ribosomal Protein uL30
Chain LT
60S ribosomal Protein eL18
Chain Lh
60S ribosomal protein eL32
Chain Li
60S ribosomal protein eL33

Coloring options:


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