IL_7ZJW_086
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7ZJW|1|L5|C|1874, 7ZJW|1|L5|A|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_086 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1473
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|L5|G|1872
7ZJW|1|L5|A|1873
7ZJW|1|L5|C|1874
7ZJW|1|L5|C|1875
7ZJW|1|L5|C|1876
7ZJW|1|L5|C|1877
7ZJW|1|L5|A|1878
7ZJW|1|L5|G|1879
7ZJW|1|L5|A|1880
7ZJW|1|L5|A|1881
7ZJW|1|L5|A|1882
7ZJW|1|L5|A|1883
*
7ZJW|1|L5|U|1977
7ZJW|1|L5|G|1978
7ZJW|1|L5|A|1979
7ZJW|1|L5|A|1980
7ZJW|1|L5|A|1981
7ZJW|1|L5|A|1982
7ZJW|1|L5|U|1983
7ZJW|1|L5|G|1984
7ZJW|1|L5|G|1985
7ZJW|1|L5|A|1986
7ZJW|1|L5|U|1987
7ZJW|1|L5|G|1988
7ZJW|1|L5|G|1989
7ZJW|1|L5|C|1990
7ZJW|1|L5|G|1991
7ZJW|1|L5|C|1992
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- 60S ribosomal protein L3
- Chain LL
- 60S ribosomal protein L10
- Chain LR
- 60S ribosomal protein uL13
- Chain Li
- 60S ribosomal protein eL33
- Chain Lp
- 60S ribosomal protein L40
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