3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
7ZJW|1|L5|C|1874, 7ZJW|1|L5|A|1980
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_086 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.1473
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7ZJW|1|L5|G|1872
7ZJW|1|L5|A|1873
7ZJW|1|L5|C|1874
7ZJW|1|L5|C|1875
7ZJW|1|L5|C|1876
7ZJW|1|L5|C|1877
7ZJW|1|L5|A|1878
7ZJW|1|L5|G|1879
7ZJW|1|L5|A|1880
7ZJW|1|L5|A|1881
7ZJW|1|L5|A|1882
7ZJW|1|L5|A|1883
*
7ZJW|1|L5|U|1977
7ZJW|1|L5|G|1978
7ZJW|1|L5|A|1979
7ZJW|1|L5|A|1980
7ZJW|1|L5|A|1981
7ZJW|1|L5|A|1982
7ZJW|1|L5|U|1983
7ZJW|1|L5|G|1984
7ZJW|1|L5|G|1985
7ZJW|1|L5|A|1986
7ZJW|1|L5|U|1987
7ZJW|1|L5|G|1988
7ZJW|1|L5|G|1989
7ZJW|1|L5|C|1990
7ZJW|1|L5|G|1991
7ZJW|1|L5|C|1992

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LE
60S ribosomal protein L3
Chain LL
60S ribosomal protein L10
Chain LR
60S ribosomal protein uL13
Chain Li
60S ribosomal protein eL33
Chain Lp
60S ribosomal protein L40

Coloring options:


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