IL_7ZJW_090

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7ZJW|1|L5|U|2023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_090 not in the Motif Atlas

Geometric match to IL_6CZR_156

Geometric discrepancy: 0.2211

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZJW|1|L5|C|2022
7ZJW|1|L5|U|2023
7ZJW|1|L5|G|2024
*
7ZJW|1|L5|C|2115
7ZJW|1|L5|G|2116

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LI

60S ribosomal Protein uL30

Chain LT

60S ribosomal Protein eL18

Chain Lh

60S ribosomal protein eL32