IL_7ZJW_091

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

7ZJW|1|L5|G|2186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_091 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.084

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7ZJW|1|L5|C|2133
7ZJW|1|L5|G|2134
7ZJW|1|L5|C|2135
*
7ZJW|1|L5|G|2185
7ZJW|1|L5|G|2186
7ZJW|1|L5|U|2187
7ZJW|1|L5|G|2188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4

Chain Ld

60S ribosomal protein L27a

Chain Lh

60S ribosomal protein eL32

Chain Ls

60S ribosomal protein eL28