3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
7ZJW|1|L5|A|2355, 7ZJW|1|L5|A|2356
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_097 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.0924
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

7ZJW|1|L5|C|2289
7ZJW|1|L5|U|2290
7ZJW|1|L5|G|2291
7ZJW|1|L5|A|2292
7ZJW|1|L5|G|2293
*
7ZJW|1|L5|C|2352
7ZJW|1|L5|G|2353
7ZJW|1|L5|A|2354
7ZJW|1|L5|A|2355
7ZJW|1|L5|A|2356
7ZJW|1|L5|G|2357

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LD
60S ribosomal protein uL2
Chain Lj
60S ribosomal protein L34
Chain Lm
60S ribosomal protein L37
Chain Lo
60S ribosomal protein eL39

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