IL_7ZJW_099

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|G|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_099 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2233

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7ZJW|1|L5|G|2385
7ZJW|1|L5|A|2386
7ZJW|1|L5|G|2387
7ZJW|1|L5|U|2388
7ZJW|1|L5|G|2389
7ZJW|1|L5|G|2390
*
7ZJW|1|L5|C|2615
7ZJW|1|L5|G|2616
7ZJW|1|L5|C|2617

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Ln

60S ribosomal protein eL38