3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
7ZJW|1|L5|A|2568
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_102 not in the Motif Atlas
Homologous match to IL_8C3A_075
Geometric discrepancy: 0.2153
The information below is about IL_8C3A_075
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

7ZJW|1|L5|C|2456
7ZJW|1|L5|C|2457
*
7ZJW|1|L5|G|2567
7ZJW|1|L5|A|2568
7ZJW|1|L5|G|2569

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LU
60S ribosomal protein L19
Chain Lj
60S ribosomal protein L34

Coloring options:


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