IL_7ZJW_106
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 7ZJW|1|L5|U|2504, 7ZJW|1|L5|A|2517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_106 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.1583
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ZJW|1|L5|U|2499
7ZJW|1|L5|G|2500
7ZJW|1|L5|G|2501
7ZJW|1|L5|A|2502
7ZJW|1|L5|A|2503
7ZJW|1|L5|U|2504
7ZJW|1|L5|G|2505
*
7ZJW|1|L5|C|2515
7ZJW|1|L5|G|2516
7ZJW|1|L5|A|2517
7ZJW|1|L5|G|2518
7ZJW|1|L5|A|2519
7ZJW|1|L5|G|2520
7ZJW|1|L5|A|2521
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LU
- 60S ribosomal protein L19
- Chain Lc
- 60S ribosomal protein L27
- Chain Lf
- 60S ribosomal protein eL30
- Chain Lj
- 60S ribosomal protein L34
- Chain Lr
- 60S ribosomal protein eL43
- Chain SY
- 40S ribosomal protein uS15
Coloring options: