IL_7ZJW_112

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7ZJW|1|L5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_112 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0861

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|C|2710
7ZJW|1|L5|G|2711
7ZJW|1|L5|U|2712
7ZJW|1|L5|A|2713
7ZJW|1|L5|A|2714
7ZJW|1|L5|C|2715
*
7ZJW|1|L5|G|2720
7ZJW|1|L5|G|2721
7ZJW|1|L5|A|2722
7ZJW|1|L5|U|2723
7ZJW|1|L5|A|2724
7ZJW|1|L5|A|2725
7ZJW|1|L5|G|2726

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41