IL_7ZJW_122

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCU*G(OMG)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_122 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1398

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7ZJW|1|L5|G|3437
7ZJW|1|L5|C|3438
7ZJW|1|L5|U|3439
*
7ZJW|1|L5|G|3475
7ZJW|1|L5|OMG|3476
7ZJW|1|L5|U|3477

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SM

40S ribosomal protein S3a