IL_7ZJW_131

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_131 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.1121

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|G|3627
7ZJW|1|L5|C|3628
7ZJW|1|L5|G|3629
7ZJW|1|L5|G|3630
*
7ZJW|1|L5|U|4309
7ZJW|1|L5|A|4310
7ZJW|1|L5|C|4311

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein uL13