IL_7ZJW_139

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACA*UCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_139 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2553

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ZJW|1|L5|G|3678
7ZJW|1|L5|A|3679
7ZJW|1|L5|C|3680
7ZJW|1|L5|A|3681
*
7ZJW|1|L5|U|3791
7ZJW|1|L5|C|3792
7ZJW|1|L5|G|3793
7ZJW|1|L5|U|3794

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein eL8

Chain Ll

60S ribosomal protein L36