IL_7ZJW_145

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_145 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3989

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZJW|1|L5|G|3873
7ZJW|1|L5|U|3874
7ZJW|1|L5|C|3875
*
7ZJW|1|L5|G|3882
7ZJW|1|L5|G|3883
7ZJW|1|L5|C|3884
7ZJW|1|L5|C|3885

Current chains

Chain L5

28S rRNA

Nearby chains