IL_7ZJW_152

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_152 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.112

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZJW|1|L5|G|4151
7ZJW|1|L5|U|4152
7ZJW|1|L5|G|4153
*
7ZJW|1|L5|U|4181
7ZJW|1|L5|U|4182
7ZJW|1|L5|U|4183
7ZJW|1|L5|U|4184
7ZJW|1|L5|U|4185

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LL

60S ribosomal protein L10