IL_7ZJW_154

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_154 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.1574

The information below is about IL_7A0S_087

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7ZJW|1|L5|C|4158
7ZJW|1|L5|C|4159
7ZJW|1|L5|A|4160
7ZJW|1|L5|A|4161
7ZJW|1|L5|G|4162
*
7ZJW|1|L5|C|4172
7ZJW|1|L5|G|4173
7ZJW|1|L5|A|4174
7ZJW|1|L5|C|4175
7ZJW|1|L5|G|4176

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain Lp

60S ribosomal protein L40