3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GUCC*GUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_179 not in the Motif Atlas
Geometric match to IL_3PDR_004
Geometric discrepancy: 0.2706
The information below is about IL_3PDR_004
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
Major groove platform
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

7ZJW|1|L5|G|4516
7ZJW|1|L5|U|4517
7ZJW|1|L5|C|4518
7ZJW|1|L5|C|4519
*
7ZJW|1|L5|G|4602
7ZJW|1|L5|U|4603
7ZJW|1|L5|C|4604

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LK
60S ribosomal protein L9
Chain LR
60S ribosomal protein uL13

Coloring options:


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