IL_7ZJW_180

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_180 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.2309

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ZJW|1|L5|U|4624
7ZJW|1|L5|C|4625
7ZJW|1|L5|C|4626
7ZJW|1|L5|C|4627
*
7ZJW|1|L5|G|4670
7ZJW|1|L5|U|4671
7ZJW|1|L5|C|4672
7ZJW|1|L5|A|4673

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6

Chain LP

60S ribosomal protein L14

Chain Li

60S ribosomal protein eL33