IL_7ZJW_213

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GU*ACC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_213 not in the Motif Atlas

Geometric match to IL_4UYK_001

Geometric discrepancy: 0.2506

The information below is about IL_4UYK_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7ZJW|1|S2|G|123
7ZJW|1|S2|U|124
*
7ZJW|1|S2|A|340
7ZJW|1|S2|C|341
7ZJW|1|S2|C|342

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SR

40S ribosomal protein S6

Chain ST

40S ribosomal protein S8