IL_7ZJW_216

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGU*AG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_216 not in the Motif Atlas

Geometric match to IL_1L9A_002

Geometric discrepancy: 0.2999

The information below is about IL_1L9A_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7ZJW|1|S2|C|151
7ZJW|1|S2|U|152
7ZJW|1|S2|G|153
7ZJW|1|S2|U|154
*
7ZJW|1|S2|A|164
7ZJW|1|S2|G|165
7ZJW|1|S2|A2M|166
7ZJW|1|S2|G|167

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6

Chain Sj

40S ribosomal protein S24