IL_7ZJW_222

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_222 not in the Motif Atlas

Geometric match to IL_4V88_404

Geometric discrepancy: 0.1546

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7ZJW|1|S2|G|412
7ZJW|1|S2|G|413
7ZJW|1|S2|G|414
*
7ZJW|1|S2|C|425
7ZJW|1|S2|G|426
7ZJW|1|S2|A|427
7ZJW|1|S2|U|428
7ZJW|1|S2|OMU|429
7ZJW|1|S2|C|430

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SU

40S ribosomal protein S9

Chain Si

40S ribosomal protein S23