IL_7ZJW_228
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCCA*UUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_228 not in the Motif Atlas
- Geometric match to IL_8SP9_002
- Geometric discrepancy: 0.3339
- The information below is about IL_8SP9_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7ZJW|1|S2|G|566
7ZJW|1|S2|U|567
7ZJW|1|S2|C|568
7ZJW|1|S2|C|569
7ZJW|1|S2|A|570
*
7ZJW|1|S2|U|582
7ZJW|1|S2|U|583
7ZJW|1|S2|A|584
7ZJW|1|S2|A|585
7ZJW|1|S2|C|586
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SU
- 40S ribosomal protein S9
- Chain Sj
- 40S ribosomal protein S24
Coloring options: