IL_7ZJW_229
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- 7ZJW|1|S2|G|601
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_229 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1121
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
7ZJW|1|S2|A|600
7ZJW|1|S2|G|601
7ZJW|1|S2|OMG|602
7ZJW|1|S2|G|603
7ZJW|1|S2|C|604
7ZJW|1|S2|A|605
7ZJW|1|S2|A|606
7ZJW|1|S2|G|607
*
7ZJW|1|S2|C|637
7ZJW|1|S2|U|638
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain SE
- 40S ribosomal protein S30
- Chain SN
- 40S ribosomal protein uS5
- Chain SO
- 40S ribosomal protein S3
- Chain SU
- 40S ribosomal protein S9
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