IL_7ZJW_234

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_234 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1371

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7ZJW|1|S2|G|666
7ZJW|1|S2|U|667
7ZJW|1|S2|U|668
7ZJW|1|S2|A2M|669
7ZJW|1|S2|A|670
7ZJW|1|S2|A|671
7ZJW|1|S2|A|672
*
7ZJW|1|S2|U|1162
7ZJW|1|S2|C|1163

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

Ribosomal protein eS26

Chain Si

40S ribosomal protein S23